old_colnames = [ ## NUCCORE "UID_NUCCORE", "ACC_NUCCORE", "Description_NUCCORE", "CreateDate_NUCCORE", "Topology_NUCCORE", "Completeness_NUCCORE", "TaxonID_NUCCORE", "Genome_NUCCORE", "Length_NUCCORE", "GC_NUCCORE", "Source_NUCCORE", ## BIOSAMPLE "UID_BIOSAMPLE", "ACC_BIOSAMPLE", "Location_BIOSAMPLE", "Coordinates_BIOSAMPLE", "IsolationSource_BIOSAMPLE", "Host_BIOSAMPLE", "CollectionDate_BIOSAMPLE", "Host_DISEASE", "SamplType_BIOSAMPLE", "Host_BIOSAMPLE_processed", "Host_DISEASE_processed", ## ASSEMBLY "UID_ASSEMBLY", "Status_ASSEMBLY", "SeqReleaseDate_ASSEMBLY", "SubmissionDate_ASSEMBLY", "Latest_ASSEMBLY", ## TAXONOMY "taxon_name", "taxon_rank", "lineage", "taxon_superkingdom_name", "taxon_phylum_name", "taxon_class_name", "taxon_order_name", "taxon_family_name", "taxon_genus_name", "taxon_species_name","taxon_superkingdom_id", "taxon_phylum_id", "taxon_class_id", "taxon_order_id", "taxon_family_id", "taxon_genus_id","taxon_species_id", ## rMLST "hits_rMLST", "hitscount_rMLST" ] new_colnames = [ ## NUCCORE "NUCCORE_UID", "NUCCORE_ACC", "NUCCORE_Description", "NUCCORE_CreateDate", "NUCCORE_Topology", "NUCCORE_Completeness", "NUCCORE_TaxonID", "NUCCORE_Genome", "NUCCORE_Length", "NUCCORE_GC", "NUCCORE_Source", ## BIOSAMPLE "BIOSAMPLE_UID", "BIOSAMPLE_ACC", "BIOSAMPLE_Location", "BIOSAMPLE_Coordinates", "BIOSAMPLE_IsolationSource", "BIOSAMPLE_Host", "BIOSAMPLE_CollectionDate", "BIOSAMPLE_HostDisease", "BIOSAMPLE_SampleType", "BIOSAMPLE_Host_label", "BIOSAMPLE_HostDisease_processed", ## ASSEMBLY "ASSEMBLY_UID", "ASSEMBLY_Status", "ASSEMBLY_SeqReleaseDate", "ASSEMBLY_SubmissionDate", "ASSEMBLY_Lastest", ## TAXONOMY "TAXONOMY_taxon_name", "TAXONOMY_taxon_rank", "TAXONOMY_taxon_lineage", "TAXONOMY_superkingdom", "TAXONOMY_phylum", "TAXONOMY_class", "TAXONOMY_order", "TAXONOMY_family", "TAXONOMY_genus", "TAXONOMY_species","TAXONOMY_superkingdom_id", "TAXONOMY_phylum_id", "TAXONOMY_class_id", "TAXONOMY_order_id", "TAXONOMY_family_id", "TAXONOMY_genus_id", "TAXONOMY_species_id", ## rMLST "rMLST_hits", "rMLST_hitscount" ]